https://avarassanchez.r-universe.devRecent package updates in avarassanchezR-universehttps://github.com/avarassanchez.pnghttps://avarassanchez.r-universe.devMon, 29 Jun 2026 21:53:18 GMTana.varas@scilifelab.se (Ana Varas-Sánchez)Translation elongation is dependent on codon-anticodon interactions, with suitable nucleotide pairing being essential for efficient translation. To quantify this relationship, we previously developed a computational pipeline (GitHub - wgao688/sc_tRNA_mRNA) that uses mRNA codon usage relative to tRNA anticodon availability as a proxy for theoretical translation efficiency (tTE). Here, we introduce tTEscanR, a powerful and user-friendly R-based package that extends this approach to quantify translation efficiency from both bulk and single-cell sequencing data. tTEscanR is a versatile tool for exploring translation efficiency in diverse cellular processes, disease mechanisms, and therapeutic development. It also features an advanced visualization module to generate high-quality plots, enhancing result interpretation and communication.https://github.com/r-universe/biocstaging/actions/runs/28408017920Mon, 29 Jun 2026 21:53:18 GMTtTEscanR0.99.0successhttps://biocstaging.r-universe.devhttps://github.com/BiocStaging/tTEscanRtTEscanR_general_use.RmdtTEscanR_general_use.html tTEscanR User Guide2025-08-27 17:18:512026-06-22 07:29:59tTEscanR_tRNA_preprocessing.RmdtTEscanR_tRNA_preprocessing.html tTEscanR tRNA-Specific Preprocessing Module2026-06-12 10:12:382026-06-22 07:29:59tTEscanR_codonfreq_module.RmdtTEscanR_codonfreq_module.html tTEscanR Codon Frequency-per-Gene Matrix2025-08-27 17:18:512026-06-22 07:29:59tTEscanR_visualization_module.RmdtTEscanR_visualization_module.html tTEscanR Visualization Module2025-08-27 17:18:512026-06-22 07:29:59